PlantPromoterDB promoter information of AT5G66400

Summary of Gene (AT5G66400)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G66400 TAIR NCBI
Gene model	AT5G66400
Description	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.

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Overview

Focused view (chromosome 5: 26520153-26518954)

`Genome position from initiation codon` `AT5G66400.1 AT5G66400.2 TSS from cDNA TSS information AT5G66400 5'->3' (-) Promoter sequence AT5G66410.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G66400

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 26519242 -89

TSS clone peak T clone - 26519241 -88

TSS clone peak A clone - 26519235 -82

TSS clone A clone - 26519234 -81

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	26519242	-89
TSS clone peak	`T`	clone	-	26519241	-88
TSS clone peak	`A`	clone	-	26519235	-82
TSS clone	`A`	clone	-	26519234	-81

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAACCGGAC - 26519277 26519285 -124 -132

AtREG521 AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG573 AACCGGAC PPDB Motif AACCG(G/A) PLACE Motif

REG CTGCCACG - 26519336 26519343 -183 -190

AtREG468 CTGCCACG ABA PPDB Motif PLACE Motif GCCAC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAACCGGAC`		-	26519277	26519285	-124	-132
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG573	`AACCGGAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CTGCCACG`		-	26519336	26519343	-183	-190
	AtREG468	`CTGCCACG`	ABA	PPDB Motif		PLACE Motif	`GCCAC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 26519806 AT5G66410.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	26519806	AT5G66410.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 26519770 AT5G66410.1

TSS clone A clone + 26519806 AT5G66410.1

TSS clone G clone + 26519807 AT5G66410.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	26519770	AT5G66410.1
TSS clone	`A`	clone	+	26519806	AT5G66410.1
TSS clone	`G`	clone	+	26519807	AT5G66410.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTCCTCTCT + 26519790 26519800 AT5G66410.1

Y Patch TCTCTTCTCT + 26519829 26519838 AT5G66410.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTCCTCTCT`	+	26519790	26519800	AT5G66410.1
Y Patch	`TCTCTTCTCT`	+	26519829	26519838	AT5G66410.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GGACACGTA + 26519551 26519559 AT5G66410.1

AtREG472 GGACACGT ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG557 GACACGTA ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG TCGTCGTT + 26519614 26519621 AT5G66410.1

AtREG648 TCGTCGTT PPDB Motif PLACE Motif

REG ATTTGGGCTCA + 26519661 26519671 AT5G66410.1

AtREG421 ATTTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG533   TTGGGCTC PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG485    TGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TGTGGGCCGTA + 26519674 26519684 AT5G66410.1

AtREG612 TGTGGGCC    DREB1Aox PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG368   TGGGCCGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG499    GGGCCGTA PPDB Motif GCCCA PLACE Motif GGGCC

REG TTAGCCCATGG + 26519698 26519708 AT5G66410.1

AtREG571 TTAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581 TAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG507    GCCCATGG PPDB Motif GCCCA, CCATGG PLACE Motif

REG CTAAGCCCTA + 26519716 26519725 AT5G66410.1

AtREG634 CTAAGCCC   PPDB Motif GCCCA PLACE Motif

AtREG651   AAGCCCTA PPDB Motif PLACE Motif