PlantPromoterDB promoter information of AT5G67490.1

Summary of Gene (AT5G67490.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G67490 TAIR NCBI
Gene model	AT5G67490.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 340 Blast hits to 340 proteins in 113 species: Archae - 0; Bacteria - 97; Metazoa - 109; Fungi - 4; Plants - 24; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 26935694-26934495)

`Genome position from initiation codon` `AT5G67488.1 TSS from cDNA TSS information AT5G67490.1 5'->3' (-) Promoter sequence AT5G67488 AT5G67488.1 AT5G67500.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G67490.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 13 - 26934721 -27

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	13	-	26934721	-27

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 26934729 -35

TSS clone T clone - 26934727 -33

TSS clone C clone - 26934724 -30

TSS clone G clone - 26934721 -27

TSS clone G clone - 26934715 -21

TSS clone C clone - 26934710 -16

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	26934729	-35
TSS clone	`T`	clone	-	26934727	-33
TSS clone	`C`	clone	-	26934724	-30
TSS clone	`G`	clone	-	26934721	-27
TSS clone	`G`	clone	-	26934715	-21
TSS clone	`C`	clone	-	26934710	-16

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTTCT - 26934723 26934731 -29 -37

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTTCT`	-	26934723	26934731	-29	-37
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TATGGCCCAAC - 26934779 26934789 -85 -95

AtREG479 TATGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG437 ATGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420   TGGCCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG449    GGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

REG TACTGGGCTTAT - 26934798 26934809 -104 -115

AtREG434 TACTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG426    TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG462     GGGCTTAT PPDB Motif GCCCA PLACE Motif

REG ATTGGGCCTAG - 26934814 26934824 -120 -130

AtREG352 ATTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356 TTGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358   TGGGCCTA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG475    GGGCCTAG PPDB Motif GCCCA PLACE Motif GGGCC

REG TACTGGGCCAA - 26934869 26934879 -175 -185

AtREG434 TACTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG384 ACTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458   CTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484    TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TGATGGGCTTG - 26934893 26934903 -199 -209

AtREG635 TGATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG378   ATGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG525    TGGGCTTG PPDB Motif GCCCA PLACE Motif TGGGCY

REG GTTAGGCC - 26934911 26934918 -217 -224

AtREG535 GTTAGGCC PPDB Motif PLACE Motif

REG TCAGCCCACGTCA - 26934959 26934971 -265 -277

AtREG609 TCAGCCCA      PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG419      CCACGTCA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TATGGCCCAAC`		-	26934779	26934789	-85	-95
	AtREG479	`TATGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG437	`ATGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG449	`GGCCCAAC`		PPDB Motif	`GCCCA, CCAACGG`	PLACE Motif	`GGGCC, TGGGCY`
REG	`TACTGGGCTTAT`		-	26934798	26934809	-104	-115
	AtREG434	`TACTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG426	`TGGGCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG462	`GGGCTTAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ATTGGGCCTAG`		-	26934814	26934824	-120	-130
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG358	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG475	`GGGCCTAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`TACTGGGCCAA`		-	26934869	26934879	-175	-185
	AtREG434	`TACTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG384	`ACTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG458	`CTGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`TGATGGGCTTG`		-	26934893	26934903	-199	-209
	AtREG635	`TGATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG525	`TGGGCTTG`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`GTTAGGCC`		-	26934911	26934918	-217	-224
	AtREG535	`GTTAGGCC`		PPDB Motif		PLACE Motif
REG	`TCAGCCCACGTCA`		-	26934959	26934971	-265	-277
	AtREG609	`TCAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG419	`CCACGTCA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 5 + 26934651 AT5G67500.1

TSS peak G 74 + 26935163 AT5G67500.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	5	+	26934651	AT5G67500.1
TSS peak	`G`	74	+	26935163	AT5G67500.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 26935164 AT5G67500.1

TSS clone T clone + 26935170 AT5G67500.1

TSS clone A clone + 26935174 AT5G67500.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	26935164	AT5G67500.1
TSS clone	`T`	clone	+	26935170	AT5G67500.1
TSS clone	`A`	clone	+	26935174	AT5G67500.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTCTC + 26935200 26935207 AT5G67500.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTCTC`	+	26935200	26935207	AT5G67500.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCGGTTCA + 26934554 26934561 AT5G67500.1

AtREG480 CCGGTTCA PPDB Motif AACCG(G/A) PLACE Motif

REG TTGGCCCAGTA + 26934869 26934879 AT5G67500.1

AtREG484 TTGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458 TGGCCCAG   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG384   GGCCCAGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG434    GCCCAGTA PPDB Motif GCCCA PLACE Motif

REG CAAGCCCATCA + 26934893 26934903 AT5G67500.1

AtREG525 CAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG635    GCCCATCA PPDB Motif GCCCA PLACE Motif

REG GGCCTAAC + 26934911 26934918 AT5G67500.1

AtREG535 GGCCTAAC PPDB Motif PLACE Motif

REG TGACGTGGGCTGA + 26934959 26934971 AT5G67500.1

AtREG419 TGACGTGG      PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG609      TGGGCTGA PPDB Motif GCCCA PLACE Motif TGGGCY