PlantPromoterDB promoter information of AT5G67500.1

Summary of Gene (AT5G67500.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G67500 TAIR NCBI
Gene model	AT5G67500.1
Description	Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.

#

Overview

Focused view (chromosome 5: 26934223-26935422)

`Genome position from initiation codon` `AT5G67488 AT5G67488.1 TSS from cDNA TSS information AT5G67500.1 5'->3' (+) Promoter sequence AT5G67488.1 AT5G67490.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G67500.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 5 + 26934651 -572

TSS peak G 74 + 26935163 -60

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	5	+	26934651	-572
TSS peak	`G`	74	+	26935163	-60

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 26934358 -865

TSS clone T clone + 26935164 -59

TSS clone T clone + 26935170 -53

TSS clone A clone + 26935174 -49

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	26934358	-865
TSS clone	`T`	clone	+	26935164	-59
TSS clone	`T`	clone	+	26935170	-53
TSS clone	`A`	clone	+	26935174	-49

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTCTC + 26935200 26935207 -23 -16

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTCTC`	+	26935200	26935207	-23	-16
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AGTCGGTT + 26934413 26934420 -810 -803

AtREG641 AGTCGGTT PPDB Motif AACCG(G/A), CCGAC PLACE Motif CCGAC, RCCGAC

REG CTAGGCCC + 26934429 26934436 -794 -787

AtREG475 CTAGGCCC PPDB Motif GCCCA PLACE Motif GGGCC

REG CCGGTTCA + 26934554 26934561 -669 -662

AtREG480 CCGGTTCA PPDB Motif AACCG(G/A) PLACE Motif

REG TTGGCCCAGTA + 26934869 26934879 -354 -344

AtREG484 TTGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458 TGGCCCAG   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG384   GGCCCAGT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG434    GCCCAGTA PPDB Motif GCCCA PLACE Motif

REG CAAGCCCATCA + 26934893 26934903 -330 -320

AtREG525 CAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG635    GCCCATCA PPDB Motif GCCCA PLACE Motif

REG GGCCTAAC + 26934911 26934918 -312 -305

AtREG535 GGCCTAAC PPDB Motif PLACE Motif

REG TGACGTGGGCTGA + 26934959 26934971 -264 -252

AtREG419 TGACGTGG      PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG609      TGGGCTGA PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AGTCGGTT`		+	26934413	26934420	-810	-803
	AtREG641	`AGTCGGTT`		PPDB Motif	`AACCG(G/A), CCGAC`	PLACE Motif	`CCGAC, RCCGAC`
REG	`CTAGGCCC`		+	26934429	26934436	-794	-787
	AtREG475	`CTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`CCGGTTCA`		+	26934554	26934561	-669	-662
	AtREG480	`CCGGTTCA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTGGCCCAGTA`		+	26934869	26934879	-354	-344
	AtREG484	`TTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG458	`TGGCCCAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG384	`GGCCCAGT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG434	`GCCCAGTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CAAGCCCATCA`		+	26934893	26934903	-330	-320
	AtREG525	`CAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG635	`GCCCATCA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GGCCTAAC`		+	26934911	26934918	-312	-305
	AtREG535	`GGCCTAAC`		PPDB Motif		PLACE Motif
REG	`TGACGTGGGCTGA`		+	26934959	26934971	-264	-252
	AtREG419	`TGACGTGG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`
	AtREG609	`TGGGCTGA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 13 - 26934721 AT5G67490.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	13	-	26934721	AT5G67490.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 26934729 AT5G67490.1

TSS clone T clone - 26934727 AT5G67490.1

TSS clone C clone - 26934724 AT5G67490.1

TSS clone G clone - 26934721 AT5G67490.1

TSS clone G clone - 26934715 AT5G67490.1

TSS clone C clone - 26934710 AT5G67490.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	26934729	AT5G67490.1
TSS clone	`T`	clone	-	26934727	AT5G67490.1
TSS clone	`C`	clone	-	26934724	AT5G67490.1
TSS clone	`G`	clone	-	26934721	AT5G67490.1
TSS clone	`G`	clone	-	26934715	AT5G67490.1
TSS clone	`C`	clone	-	26934710	AT5G67490.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTTCT - 26934723 26934731 AT5G67490.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTTCT`	-	26934723	26934731	AT5G67490.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TATGGCCCAAC - 26934779 26934789 AT5G67490.1

AtREG479 TATGGCCC    PPDB Motif GCCCA PLACE Motif GGGCC

AtREG437 ATGGCCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420   TGGCCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG449    GGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

REG TACTGGGCTTAT - 26934798 26934809 AT5G67490.1

AtREG434 TACTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG426    TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG462     GGGCTTAT PPDB Motif GCCCA PLACE Motif

REG ATTGGGCCTAG - 26934814 26934824 AT5G67490.1

AtREG352 ATTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356 TTGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358   TGGGCCTA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG475    GGGCCTAG PPDB Motif GCCCA PLACE Motif GGGCC

REG TACTGGGCCAA - 26934869 26934879 AT5G67490.1

AtREG434 TACTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG384 ACTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG458   CTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484    TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TGATGGGCTTG - 26934893 26934903 AT5G67490.1

AtREG635 TGATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG378   ATGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG525    TGGGCTTG PPDB Motif GCCCA PLACE Motif TGGGCY

REG GTTAGGCC - 26934911 26934918 AT5G67490.1

AtREG535 GTTAGGCC PPDB Motif PLACE Motif

REG TCAGCCCACGTCA - 26934959 26934971 AT5G67490.1

AtREG609 TCAGCCCA      PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG419      CCACGTCA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA