PlantPromoterDB promoter information of ATMG01370.1
Summary of Gene (ATMG01370.1)
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Overview
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Focused view (chromosome M: 362052-360853)
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Genome position
from initiation codon ATMG01380.1 ATMG01390 ATMG01390.1 TSS from cDNA TSS information ATMG01370.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of ATMG01370.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 4 | - | 361797 | -745 |
| TSS peak | G | 4 | - | 361650 | -598 |
| TSS peak | A | 4 | - | 361081 | -29 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAAACCGG | - | 361173 | 361180 | -121 | -128 | |||
| AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GGGCTTTT | - | 361267 | 361274 | -215 | -222 | |||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCCTTATGGGCTGGGCCACACACGTG | - | 361702 | 361728 | -650 | -676 | |||
| AtREG616 | GCCCTTAT | PPDB Motif | PLACE Motif | ||||||
| AtREG394 | TTATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG477 | TATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG454 | GGCTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG458 | CTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG445 | TGGGCCAC | PPDB Motif | GCCCA | PLACE Motif | GCCAC, GGGCC, TGGGCY | ||||
| AtREG460 | CACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | GATGACGT | - | 361741 | 361748 | -689 | -696 | |||
| AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | AAAACGGC | - | 361819 | 361826 | -767 | -774 | |||
| AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | GACGACGTC | - | 361911 | 361919 | -859 | -867 | |||
| AtREG526 | GACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG431 | ACGACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| REG | TTTGACCC | - | 361927 | 361934 | -875 | -882 | |||
| AtREG592 | TTTGACCC | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | AAAGTCAA | - | 361938 | 361945 | -886 | -893 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | GGGCTTTT | - | 361960 | 361967 | -908 | -915 | |||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||